Changelog
One entry per automated pipeline run, recording data versions, tool versions, models and what changed in the sampled taxon set. Hand-written notes about content changes live in CHANGELOG.md and the git history.
2026-08-16 profile ci mitophy 0.1.0
- RefSeq mitochondrion
- mitochondrion.1.genomic.gbff.gz — Thu, 09 Jul 2026 18:20:43 GMT · 18,236 records, 17,720 complete genomes
- origin tree
- IQ-TREE LG+F+G4 · 103 taxa × 10,199 sites · 35 markers · lnL -821,164.9 · outgroup (Betaproteobacteria, Gammaproteobacteria, Bacteria) · 2 min
- diversification tree
- FastTree LG GAMMA · 618 taxa × 4,030 sites · lnL -2,095,922.6
- sampled genomes
- 618 · +0 / −0 vs previous run
- tools
- python 3.12.13 · biopython 1.88 · pyhmmer 0.12.1 · mafft 7.526 · trimal 1.5.rev1 · iqtree iqtree3 3.1.3 · fasttree 2.2.0 · datasets 18.35.0
- record
- 2026-08-16.json
2026-08-15 profile default mitophy 0.1.0
- RefSeq mitochondrion
- mitochondrion.1.genomic.gbff.gz — Thu, 09 Jul 2026 18:20:43 GMT · 18,236 records, 17,720 complete genomes
- origin tree
- IQ-TREE LG+F+G4 · 103 taxa × 10,206 sites · 35 markers · lnL -821,983.7 · outgroup (Betaproteobacteria, Gammaproteobacteria, Bacteria) · 54 min
- diversification tree
- FastTree LG GAMMA · 618 taxa × 4,017 sites · lnL -2,071,826.7
- sampled genomes
- 618 · +0 / −0 vs previous run
- tools
- python 3.13.11 · biopython 1.87 · pyhmmer 0.12.2 · mafft 7.505 · trimal 1.5.rev1 · iqtree iqtree3 3.1.1 · fasttree 2.2.0 · datasets 18.25.1
- record
- 2026-08-15.json